Tweaked the folder structure to look more sophisticated.

.gitignore

@@ -8,3 +8,6 @@ Gemfile
 Gemfile.lock
 node_modules
 package.json
+*.gem
+*.gemspec
+.jekyll-cache

_layouts/default.html

@@ -5,7 +5,7 @@
     {% seo %}
     {% include meta.html %}
 
-    <link rel="stylesheet" type="text/css" href="{{ site.baseurl }}/style.css" />
+    <link rel="stylesheet" type="text/css" href="{{ site.baseurl }}/assets/style.css" />
     <link rel="alternate" type="application/rss+xml" title="{{ site.name }} - {{ site.description }}" href="{{ site.baseurl }}/feed.xml" />
     <link rel="canonical" href="{{ site.url }}{{ page.url }}" />
 

_pages/search.md

@@ -9,7 +9,7 @@ permalink: /search/
     <ul id="results-container"></ul>
 </div>
 
-<script src="{{ site.baseurl }}/js/simple-jekyll-search.min.js" type="text/javascript"></script>
+<script src="{{ site.baseurl }}/assets/simple-jekyll-search.min.js" type="text/javascript"></script>
 
 <script>
     SimpleJekyllSearch({